Clinical AI Kit documentation
Standalone, readable documentation for Clinical AI Kit. These pages are intentionally separate from the application so you can study the system without the product shell around you. Use the buttons above to jump back to the main page or straight into the clinician/admin workspace.
Karpathy LLM Wiki
The compiled knowledge base: one distilled article per topic with summaries, stable categories, and an index built for fast reading.
Compiled from the Obsidian vaultObsidian Project Wiki
The full engineering vault: architecture notes, process documentation, security and memory design, operations runbooks, and generated inventories.
Source vault, rendered page by pageIn-app API console
The developer console inside the product, with request presets for the clinical workflows.
Opens the applicationKarpathy LLM Wiki articles
- Agent Architecturearchitecture/agent-architecture.html
- Diagram Atlasarchitecture/diagram-atlas.html
- Model Registryarchitecture/model-registry.html
- Module Dependency Grapharchitecture/module-dependency-graph.html
- Module Referencearchitecture/module-reference.html
- System Overviewarchitecture/system-overview.html
- Claude Harnessharness/claude-harness.html
- Knowledge Base Indexindex.html
- Wiki Loglog.html
- Clinical Appoperations/clinical-app.html
- Deploymentoperations/deployment.html
- MCP and A2Aoperations/mcp-and-a2a.html
- Observabilityoperations/observability.html
- REST API and Developer Consoleoperations/rest-api-and-developer-console.html
- Testing and Evaloperations/testing-and-eval.html
- Course Concepts Mapoverview/course-concepts-map.html
- Problem and Solutionoverview/problem-and-solution.html
- DB Intelligence Pipelineprocesses/db-intelligence-pipeline.html
- Deployment Pipelineprocesses/deployment-pipeline.html
- Development Workflowprocesses/development-workflow.html
- End-to-End Request Flowprocesses/end-to-end-request-flow.html
- Human-in-the-Loop Approvalprocesses/human-in-the-loop-approval.html
- Image Extraction Pipelineprocesses/image-extraction-pipeline.html
- Patient QA Pipelineprocesses/patient-qa-pipeline.html
- Memory Layerssecurity-memory/memory-layers.html
- Security Layerssecurity-memory/security-layers.html
Obsidian Project Wiki pages
- Course Concepts Map01 Overview/Course Concepts Map.html
- Problem and Solution01 Overview/Problem and Solution.html
- Agent Architecture02 Architecture/Agent Architecture.html
- Diagram Atlas02 Architecture/Diagram Atlas.html
- Model Registry02 Architecture/Model Registry.html
- Module Dependency Graph02 Architecture/Module Dependency Graph.html
- Module Reference02 Architecture/Module Reference.html
- System Overview02 Architecture/System Overview.html
- DB Intelligence Pipeline03 Processes/DB Intelligence Pipeline.html
- Deployment Pipeline03 Processes/Deployment Pipeline.html
- Development Workflow03 Processes/Development Workflow.html
- End-to-End Request Flow03 Processes/End-to-End Request Flow.html
- Human-in-the-Loop Approval03 Processes/Human-in-the-Loop Approval.html
- Image Extraction Pipeline03 Processes/Image Extraction Pipeline.html
- Patient QA Pipeline03 Processes/Patient QA Pipeline.html
- Security Layers04 Security/Security Layers.html
- Memory Layers05 Memory/Memory Layers.html
- Clinical App06 Operations/Clinical App.html
- Deployment06 Operations/Deployment.html
- MCP and A2A06 Operations/MCP and A2A.html
- Observability06 Operations/Observability.html
- REST API and Developer Console06 Operations/REST API and Developer Console.html
- Testing and Eval06 Operations/Testing and Eval.html
- Claude Harness07 Harness/Claude Harness.html
- Changelog_generated/Changelog.html
- Drift Report_generated/Drift Report.html
- Harness Index_generated/Harness Index.html
- Module Inventory_generated/Module Inventory.html
- capstone_agent/__init__.py_generated/modules/capstone_agent.__init__.html
- capstone_agent/a2a_server.py_generated/modules/capstone_agent.a2a_server.html
- capstone_agent/agent.py_generated/modules/capstone_agent.agent.html
- capstone_agent/app.py_generated/modules/capstone_agent.app.html
- capstone_agent/callbacks.py_generated/modules/capstone_agent.callbacks.html
- capstone_agent/catalog.py_generated/modules/capstone_agent.catalog.html
- capstone_agent/clinical_schemas.py_generated/modules/capstone_agent.clinical_schemas.html
- capstone_agent/config.py_generated/modules/capstone_agent.config.html
- capstone_agent/context.py_generated/modules/capstone_agent.context.html
- capstone_agent/database.py_generated/modules/capstone_agent.database.html
- capstone_agent/document_processor.py_generated/modules/capstone_agent.document_processor.html
- capstone_agent/human_in_the_loop.py_generated/modules/capstone_agent.human_in_the_loop.html
- capstone_agent/llm.py_generated/modules/capstone_agent.llm.html
- capstone_agent/memory.py_generated/modules/capstone_agent.memory.html
- capstone_agent/mock_data.py_generated/modules/capstone_agent.mock_data.html
- capstone_agent/models.py_generated/modules/capstone_agent.models.html
- capstone_agent/observability.py_generated/modules/capstone_agent.observability.html
- capstone_agent/orchestration.py_generated/modules/capstone_agent.orchestration.html
- capstone_agent/plugins.py_generated/modules/capstone_agent.plugins.html
- capstone_agent/prompts.py_generated/modules/capstone_agent.prompts.html
- capstone_agent/security.py_generated/modules/capstone_agent.security.html
- capstone_agent/tools.py_generated/modules/capstone_agent.tools.html
- capstone_agent/vector_store.py_generated/modules/capstone_agent.vector_store.html
- clinical_app/__init__.py_generated/modules/clinical_app.__init__.html
- clinical_app/agent_runtime.py_generated/modules/clinical_app.agent_runtime.html
- clinical_app/app.py_generated/modules/clinical_app.app.html
- clinical_app/document.py_generated/modules/clinical_app.document.html
- clinical_app/live_bridge.py_generated/modules/clinical_app.live_bridge.html
- clinical_app/models.py_generated/modules/clinical_app.models.html
- clinical_app/repository.py_generated/modules/clinical_app.repository.html
- clinical_app/system.py_generated/modules/clinical_app.system.html
- clinical_app/tenancy.py_generated/modules/clinical_app.tenancy.html
- mcp_server/__init__.py_generated/modules/mcp_server.__init__.html
- mcp_server/server.py_generated/modules/mcp_server.server.html
- scripts/build_docs_site.py_generated/modules/scripts.build_docs_site.html
- scripts/build_llm_wiki.py_generated/modules/scripts.build_llm_wiki.html
- scripts/build_vector_index.py_generated/modules/scripts.build_vector_index.html
- scripts/check_harness.py_generated/modules/scripts.check_harness.html
- scripts/check_source_safety.py_generated/modules/scripts.check_source_safety.html
- scripts/export_diagrams.py_generated/modules/scripts.export_diagrams.html
- scripts/generate_database_showcase.py_generated/modules/scripts.generate_database_showcase.html
- scripts/generate_database_showcase_demo2.py_generated/modules/scripts.generate_database_showcase_demo2.html
- scripts/generate_extraction_showcase.py_generated/modules/scripts.generate_extraction_showcase.html
- scripts/generate_extraction_showcase_demo2.py_generated/modules/scripts.generate_extraction_showcase_demo2.html
- scripts/generate_live_test_data.py_generated/modules/scripts.generate_live_test_data.html
- scripts/generate_multimodal_patient_showcase.py_generated/modules/scripts.generate_multimodal_patient_showcase.html
- scripts/generate_multimodal_patient_showcase_demo2.py_generated/modules/scripts.generate_multimodal_patient_showcase_demo2.html
- scripts/harness_runtime.py_generated/modules/scripts.harness_runtime.html
- scripts/ingest_capstone_live_samples.py_generated/modules/scripts.ingest_capstone_live_samples.html
- scripts/run_clinical_app_dev.py_generated/modules/scripts.run_clinical_app_dev.html
- scripts/showcase_clinical_core.py_generated/modules/scripts.showcase_clinical_core.html
- scripts/sync_harness.py_generated/modules/scripts.sync_harness.html
- scripts/sync_wiki.py_generated/modules/scripts.sync_wiki.html
- tests/__init__.py_generated/modules/tests.__init__.html
- tests/conftest.py_generated/modules/tests.conftest.html
- tests/test_agent_eval.py_generated/modules/tests.test_agent_eval.html
- tests/test_callbacks.py_generated/modules/tests.test_callbacks.html
- tests/test_clinical_api.py_generated/modules/tests.test_clinical_api.html
- tests/test_clinical_tools.py_generated/modules/tests.test_clinical_tools.html
- tests/test_context.py_generated/modules/tests.test_context.html
- tests/test_document_parsing.py_generated/modules/tests.test_document_parsing.html
- tests/test_eval.py_generated/modules/tests.test_eval.html
- tests/test_harness_runtime.py_generated/modules/tests.test_harness_runtime.html
- tests/test_live_bridge.py_generated/modules/tests.test_live_bridge.html
- tests/test_live_ingestion.py_generated/modules/tests.test_live_ingestion.html
- tests/test_memory.py_generated/modules/tests.test_memory.html
- tests/test_orchestration.py_generated/modules/tests.test_orchestration.html
- tests/test_product_integration.py_generated/modules/tests.test_product_integration.html
- tests/test_product_orchestration.py_generated/modules/tests.test_product_orchestration.html
- tests/test_security.py_generated/modules/tests.test_security.html
- tests/test_showcase_generators.py_generated/modules/tests.test_showcase_generators.html
- tests/test_template_generators.py_generated/modules/tests.test_template_generators.html
- tests/test_tools.py_generated/modules/tests.test_tools.html
- tests/test_vector_store.py_generated/modules/tests.test_vector_store.html
- tests/test_versioned_api.py_generated/modules/tests.test_versioned_api.html
- tests/test_wiki_sync.py_generated/modules/tests.test_wiki_sync.html
- Test Inventory_generated/Test Inventory.html
- Clinical AI KitHome.html